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Mining The Cancer Genome Atlas database for tumor mutation burden and its clinical implications in gastric cancer

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单位: [1]Department of Gastroenterology, China-Japan Friendship Hospital, Beijing 100029, China [2]Graduate school, Peking Union Medical College and Chinese Academy of Medical Sciences, Beijing 100730, China
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关键词: Tumor mutational burden Gastric cancer Prognosis Immune infiltration microRNA Immunotherapy

摘要:
BACKGROUND Tumor mutational burden (TMB) is an important independent biomarker for the response to immunotherapy in multiple cancers. However, the clinical implications of TMB in gastric cancer (GC) have not been fully elucidated. AIM To explore the landscape of mutation profiles and determine the correlation between TMB and microRNA (miRNA) expression in GC. METHODS Genomic, transcriptomic, and clinical data from The Cancer Genome Atlas were used to obtain mutational profiles and investigate the statistical correlation between mutational burden and the overall survival of GC patients. The difference in immune infiltration between high- and low-TMB subgroups was evaluated by Wilcoxon rank-sum test. Furthermore, miRNAs differentially expressed between the high- and low-TMB subgroups were identified and the least absolute shrinkage and selection operator method was employed to construct a miRNA-based signature for TMB prediction. The biological functions of the predictive miRNAs were identified with DIANA-miRPath v3.0. RESULTS C>T single nucleotide mutations exhibited the highest mutation incidence, and the top three mutated genes were TTN, TP53, and MUC16 in GC. High TMB values (top 20%) were markedly correlated with better survival outcome, and multivariable regression analysis indicated that TMB remained prognostic independent of TNM stage, histological grade, age, and gender. Different TMB levels exhibited different immune infiltration patterns. Significant differences between the high- and low-TMB subgroups were observed in the infiltration of CD8+ T cells, M1 macrophages, regulatory T cells, and CD4+ T cells. In addition, we developed a miRNA-based signature using 23 differentially expressed miRNAs to predict TMB values of GC patients. The predictive performance of the signature was confirmed in the testing and the whole set. Receiver operating characteristic curve analysis demonstrated the optimal performance of the signature. Finally, enrichment analysis demonstrated that the set of miRNAs was significantly enriched in many key cancer and immune-related pathways. CONCLUSION TMB

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出版当年[2020]版:
大类 | 3 区 医学
小类 | 4 区 胃肠肝病学 4 区 肿瘤学
最新[2025]版:
大类 | 4 区 医学
小类 | 4 区 胃肠肝病学 4 区 肿瘤学
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出版当年[2019]版:
Q3 GASTROENTEROLOGY & HEPATOLOGY Q3 ONCOLOGY
最新[2023]版:
Q3 GASTROENTEROLOGY & HEPATOLOGY Q3 ONCOLOGY

影响因子: 最新[2023版] 最新五年平均[2021-2025] 出版当年[2019版] 出版当年五年平均[2015-2019] 出版前一年[2018版] 出版后一年[2020版]

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第一作者单位: [1]Department of Gastroenterology, China-Japan Friendship Hospital, Beijing 100029, China [2]Graduate school, Peking Union Medical College and Chinese Academy of Medical Sciences, Beijing 100730, China
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通讯机构: [1]Department of Gastroenterology, China-Japan Friendship Hospital, Beijing 100029, China [2]Graduate school, Peking Union Medical College and Chinese Academy of Medical Sciences, Beijing 100730, China [*1]Department of Gastroenterology, China-Japan Friendship Hospital, No. 2 Yinghua East Road, Chaoyang District, Beijing 100029, China
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