单位:[1]Department of Gastroenterology, Beijing Friendship Hospital, Capital Medical University, National Clinical Research Centre for Digestive Diseases, Beijing, 100050, People’s Republic of China临床科室国家中心消化分中心消化内科首都医科大学附属北京友谊医院[2]Department of Pulmonary and Critical Care Medicine, China-Japan Friendship Hospital,Graduate School of Peking Union Medical College, Chinese Academy of Medical Sciences, Beijing, 100029, People’s Republic of China[3]Department of Burn and Plastic Surgery, The First Affiliated Hospital of Nanjing Medical University, Nanjing, Jiangsu, 210029, People’s Republic of China江苏省人民医院
Purpose: Liver cancer is the fifth most common type of cancer worldwide, and the ATP-binding cassette (ABC) transporter family has been widely accepted as a cause of multidrug resistance. This study was conducted to explore the potential value and mechanisms of the ABC transporter gene family in the liver hepatocellular carcinoma (LIHC). Materials and Methods: Data were collected from different public databases. UALCAN, ONCOMINE, and GEPIA were used to retrieve a selection of differently expressed and pathological stage-related genes among the ABC family. Principal component analysis (PCA) was utilized for grouping, and its prognostic value was evaluated by univariate and multivariate Cox analyses. The co-expression pattern was constructed with UALCAN, and the functional analyses were carried out with DAVID. The correlation between the biomarker and immune infiltration, genetic alteration frequency, and drug sensitivity were explored with TIMER, cBioPortal, GDSC and CTRP, respectively. Finally, tSNE algorithm was used to explore the distribution of ABCC5 expressed cells. Results: Among the ABC transporter family members, ABCC5 was differently expressed and strongly related to the pathological stage of LIHC. PCA divided patients of LIHC into two groups, and Cox analyses demonstrated that ABCC5 was an independent risk factor of LIHC. Functional analyses indicated that the genes were enriched in the pathways of transmembrane transporter, ATPase activity, and bile secretion. ABCC5 is also associated with immune infiltration of cells like macrophages, neutrophils, and dendritic cells. The genetic alteration frequency of ABCC5 confirmed its potential value in LIHC. In addition, several drugs were explored and found to be relevant to LIHC. The t-SNE showed that expression of ABCC5 was most concentrated in macrophages, followed by hepatocytes. Conclusion: ABCC5 may facilitate LIHC progression through different mechanisms and be a potential biomarker and target for diagnosis, prognosis, and therapy of LIHC.
基金:
Digestive Medical Coordinated Development Center of Beijing Hospitals Authority [XXZ0105]; Special Scientific Research Fund for Tutor [YYDSZX201901]; Medical and Health Public Foundation of Beijing [YWJKJJHKYJJ-B17262-067]; Science and Technology Development Project of China State Railway Group [N2019Z004]
第一作者单位:[1]Department of Gastroenterology, Beijing Friendship Hospital, Capital Medical University, National Clinical Research Centre for Digestive Diseases, Beijing, 100050, People’s Republic of China
共同第一作者:
通讯作者:
通讯机构:[1]Department of Gastroenterology, Beijing Friendship Hospital, Capital Medical University, National Clinical Research Centre for Digestive Diseases, Beijing, 100050, People’s Republic of China[*1]Department of Gastroenterology, Beijing Friendship Hospital, Capital Medical University, National Clinical Research Centre for Digestive Diseases, No. 95, Yongan Road, Xicheng District, Beijing, 100050, People’s Republic of China
推荐引用方式(GB/T 7714):
Yuting Qiu,Haobo Li,Jiaheng Xie,et al.Identification of ABCC5 Among ATP-Binding Cassette Transporter Family as a New Biomarker for Hepatocellular Carcinoma Based on Bioinformatics Analysis[J].INTERNATIONAL JOURNAL of GENERAL MEDICINE.2021,14:7235-7246.doi:10.2147/IJGM.S333904.
APA:
Yuting Qiu,Haobo Li,Jiaheng Xie,Xinwei Qiao&Jing Wu.(2021).Identification of ABCC5 Among ATP-Binding Cassette Transporter Family as a New Biomarker for Hepatocellular Carcinoma Based on Bioinformatics Analysis.INTERNATIONAL JOURNAL of GENERAL MEDICINE,14,
MLA:
Yuting Qiu,et al."Identification of ABCC5 Among ATP-Binding Cassette Transporter Family as a New Biomarker for Hepatocellular Carcinoma Based on Bioinformatics Analysis".INTERNATIONAL JOURNAL of GENERAL MEDICINE 14.(2021):7235-7246