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Comprehensive Analysis of REST/NRSF Gene in Glioma and Its ceRNA Network Identification

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单位: [1]Department of Neurosurgery, China-Japan Friendship Hospital, Beijing, China, [2]Department of Neurosurgery, Peking University China-Japan Friendship School of Clinical Medicine, Beijing, China, [3]Institute of Clinical Medical Sciences, China-Japan Friendship Hospital, Beijing, China, [4]Department of Neurosurgery, Graduate School of Peking Union Medical College, Beijing, China
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关键词: REST (RE-1 silencing transcription factor) glioma therapeutic target ceRNA experiment validation

摘要:
We sought to clarify the clinical relationship between REST/NRSF expression and the prognosis of glioma and explore the REST-associated competitive endogenous RNA (ceRNA) network in glioma. We downloaded RNA-seq, miRNA-seq and correlated clinical data of 670 glioma patients from The Cancer Genome Atlas and analyzed the correlation between REST expression, clinical characteristics and prognosis. Differentially expressed genes (DEGs) were identified with DESeq2 and analyzed with Gene Ontology (GO) and the Kyoto Encyclopedia of Genes and Genomes (KEGG) using the Profiler package. Starbase was used to explore the regulatory interaction between REST and miRNAs or LncRNAs. The lncRNA-miRNA-REST ceRNA network was constructed with Cytoscape. RT-qPCR, WB, CCK8, wound-healing, and luciferase assays were performed to validate the ceRNA network. Results showed that REST expression was significantly higher in glioma patients than normal samples. Higher REST expression was significantly associated with worse overall survival, progression-free interval, and worse disease-specific survival in glioma patients. The DEGs of mRNA, miRNA, and lncRNA were identified, and GO and KEGG enrichment analyses were performed. Finally, REST-associated ceRNA networks, including NR2F2-AS1-miR129-REST and HOTAIRM1-miR137-REST, were experimentally validated. Thus, REST may be a prognostic biomarker and therapeutic target in glioma, and its regulatory network validated in this study may provide insights into glioma's molecular regulatory mechanisms.

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出版当年[2020]版:
大类 | 3 区 医学
小类 | 3 区 医学:内科
最新[2025]版:
大类 | 3 区 医学
小类 | 3 区 医学:内科
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出版当年[2019]版:
Q1 MEDICINE, GENERAL & INTERNAL
最新[2023]版:
Q1 MEDICINE, GENERAL & INTERNAL

影响因子: 最新[2023版] 最新五年平均[2021-2025] 出版当年[2019版] 出版当年五年平均[2015-2019] 出版前一年[2018版] 出版后一年[2020版]

第一作者:
第一作者单位: [1]Department of Neurosurgery, China-Japan Friendship Hospital, Beijing, China, [2]Department of Neurosurgery, Peking University China-Japan Friendship School of Clinical Medicine, Beijing, China,
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通讯机构: [1]Department of Neurosurgery, China-Japan Friendship Hospital, Beijing, China, [2]Department of Neurosurgery, Peking University China-Japan Friendship School of Clinical Medicine, Beijing, China, [4]Department of Neurosurgery, Graduate School of Peking Union Medical College, Beijing, China
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