单位:[a]Affiliated Hospital of Chengde Medical College,[b]Hebei Key Laboratory of Study and Exploitation of Chinese Medicine, Chengde Medical College, Chengde,[c]First Teaching Hospital of Tianjin University of Traditional Chinese Medicine, Tianjin,[d]China-Japan Friendship Hospital, Beijing,[e]Tianjin University of Traditional Chinese Medicine, Tianjin, China.
Human bladder cancer (BCa) is one of the most commonly diagnosed malignancies worldwide. It has high recurrence rates and low-grade malignancy, thus representing an important public health concern. An increasing number of studies suggest that long-noncoding RNAs (lncRNAs) play important roles in various biological processes and disease pathologies, including cancer. We analyzed the expression profiles of lncRNA, miRNA, and mRNA, along with the clinical information of BCa patients collected from the Cancer Genome Atlas database to identify lncRNA biomarkers for prognosis. We also constructed an lncRNA-miRNA-mRNA global triple network (competitive endogenous RNA network) by bioinformational approach. This BCa lncRNA-miRNA-mRNA network consisted of 23 miRNA nodes, 52 mRNA nodes, 59 lncRNA nodes, and 365 edges. Subsequent gene ontology (GO) and pathway analyses were performed using BinGO for Cytoscape and Database for Annotation, Visualization, and Integration Discovery, respectively, highlighting important GO terms and pathways that were enriched in the network. Subnetworks were created using 3 key lncRNAs (MAGI2-AS3, ADAMTS9-AS2, and LINC00330), revealing associations with BCa-linked mRNAs and miRNAs. Finally, an analysis of significantly differentiating RNAs found 6 DElncRNAs (AC112721.1, ADAMTS9-AS1, ADAMTS9-AS2, HCG22, MYO16-AS1, and SACS-AS1), 1 DEmiRNA (miRNA-195), and 6 DEmRNAs (CCNB1, FAM129A, MAP1B, TMEM100, A1IFM3, and HOXB5) that correlated with BCa patient survival. Our results provide a novel perspective from which to study the lncRNA-related ceRNA network in BCa, contributing to the development of future diagnostic biomarkers and therapeutic targets.
基金:
China Postdoctoral Science FoundationChina Postdoctoral Science Foundation [2017M610815]; Hebei Natural Science FoundationNatural Science Foundation of Hebei Province [H2017406031]; Young Talents Project of Hebei Education Department [BJ201602]; National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [81641136, 81703659, 81503506]; Chengde city science and technology research and development projects [20151048]
第一作者单位:[a]Affiliated Hospital of Chengde Medical College,[*1]Affiliated Hospital of Chengde Medical College, Chengde 067000, China
通讯作者:
通讯机构:[a]Affiliated Hospital of Chengde Medical College,[*1]Affiliated Hospital of Chengde Medical College, Chengde 067000, China
推荐引用方式(GB/T 7714):
Naiqiang Zhu,Jingyi Hou,Yuanhao Wu,et al.Integrated analysis of a competing endogenous RNA network reveals key lncRNAs as potential prognostic biomarkers for human bladder cancer[J].MEDICINE.2018,97(35):doi:10.1097/MD.0000000000011887.
APA:
Naiqiang Zhu,Jingyi Hou,Yuanhao Wu,Jinxin Liu,Geng Li...&Youxin Song.(2018).Integrated analysis of a competing endogenous RNA network reveals key lncRNAs as potential prognostic biomarkers for human bladder cancer.MEDICINE,97,(35)
MLA:
Naiqiang Zhu,et al."Integrated analysis of a competing endogenous RNA network reveals key lncRNAs as potential prognostic biomarkers for human bladder cancer".MEDICINE 97..35(2018)