Background: Laboratory testing for KRAS (v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog) mutations in metastatic colorectal cancer (mCRC) is performed by various methods in China, but there is no standardized system for proficiency testing or assay performance evaluations. The aim of this study was to evaluate assay and laboratory performance with artificial samples derived from formalin-fixed, paraffin-embedded (FFPE) cell lines. Methods: Artificial FFPE samples were prepared from cultured cell lines to construct a proficiency panel of 10 samples covering eight KRAS mutations and two wildtype samples. The samples were validated by Sanger sequencing and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS). The panel was distributed to participating laboratories and their reported results were compared to the reference sequences. Results: The percentages of mutant KRAS alleles in each mutant sample were more than 50% by MALDI-TOF-MS. Sixty-three laboratories reported results, including 41 hospital laboratories and 22 commercial laboratories and reagent manufacturers. Only 55.6% (35/63) of the laboratories correctly identified the mutations in all samples and 33.3% (21/63) reported at least one false-positive result. The false-positive ratio was 7.1% (45/630) and the false-negative ratio was 3.0% (15/504). Conclusions: KRAS mutations can be missed even by the most sensitive methods if the procedures are not performed correctly. False-positive results are a substantial problem in KRAS testing; laboratories must use sufficient negative controls to identify cross-contamination from PCR-amplified products or between samples during handling and DNA extraction.
基金:
capital development fund of the Beijing Municipal Public Health Bureau [2011-4011-02]
第一作者单位:[2]Peking Univ, Beijing Hosp, Minist Hlth, Sch Clin Med 5,Natl Ctr Clin Labs, Beijing 100871, Peoples R China
通讯作者:
通讯机构:[1]Beijing Hosp, Minist Hlth, Natl Ctr Clin Labs, Beijing 100730, Peoples R China[*1]Beijing Hosp, Minist Hlth, Natl Ctr Clin Labs, 1 Dahua Rd, Beijing 100730, Peoples R China
推荐引用方式(GB/T 7714):
Zhang Rui,Han Yanxi,Huang Jie,et al.Results of first proficiency test for KRAS testing with formalin-fixed, paraffin-embedded cell lines in China[J].CLINICAL CHEMISTRY and LABORATORY MEDICINE.2014,52(12):1851-1857.doi:10.1515/cclm-2014-0227.
APA:
Zhang, Rui,Han, Yanxi,Huang, Jie,Ma, Liang,Li, Yulong&Li, Jinming.(2014).Results of first proficiency test for KRAS testing with formalin-fixed, paraffin-embedded cell lines in China.CLINICAL CHEMISTRY and LABORATORY MEDICINE,52,(12)
MLA:
Zhang, Rui,et al."Results of first proficiency test for KRAS testing with formalin-fixed, paraffin-embedded cell lines in China".CLINICAL CHEMISTRY and LABORATORY MEDICINE 52..12(2014):1851-1857