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Results of first proficiency test for KRAS testing with formalin-fixed, paraffin-embedded cell lines in China

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单位: [1]Beijing Hosp, Minist Hlth, Natl Ctr Clin Labs, Beijing 100730, Peoples R China [2]Peking Univ, Beijing Hosp, Minist Hlth, Sch Clin Med 5,Natl Ctr Clin Labs, Beijing 100871, Peoples R China [3]Natl Inst Food & Drug Control, Dept In Vitro Diagnost Reagents, Beijing, Peoples R China [4]China Japan Friendship Hosp, Dept Clin Labs, Beijing, Peoples R China [5]Chinese Acad Med Sci, Peking Union Med Coll, Natl Ctr Clin Labs, Grad Sch,Beijing Hosp,Minist Hlth, Beijing 100730, Peoples R China
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关键词: colorectal cancer KRAS proficiency testing quality assurance

摘要:
Background: Laboratory testing for KRAS (v-Ki-ras2 Kirsten rat sarcoma viral oncogene homolog) mutations in metastatic colorectal cancer (mCRC) is performed by various methods in China, but there is no standardized system for proficiency testing or assay performance evaluations. The aim of this study was to evaluate assay and laboratory performance with artificial samples derived from formalin-fixed, paraffin-embedded (FFPE) cell lines. Methods: Artificial FFPE samples were prepared from cultured cell lines to construct a proficiency panel of 10 samples covering eight KRAS mutations and two wildtype samples. The samples were validated by Sanger sequencing and matrix-assisted laser desorption/ionization time-of-flight mass spectrometry (MALDI-TOF-MS). The panel was distributed to participating laboratories and their reported results were compared to the reference sequences. Results: The percentages of mutant KRAS alleles in each mutant sample were more than 50% by MALDI-TOF-MS. Sixty-three laboratories reported results, including 41 hospital laboratories and 22 commercial laboratories and reagent manufacturers. Only 55.6% (35/63) of the laboratories correctly identified the mutations in all samples and 33.3% (21/63) reported at least one false-positive result. The false-positive ratio was 7.1% (45/630) and the false-negative ratio was 3.0% (15/504). Conclusions: KRAS mutations can be missed even by the most sensitive methods if the procedures are not performed correctly. False-positive results are a substantial problem in KRAS testing; laboratories must use sufficient negative controls to identify cross-contamination from PCR-amplified products or between samples during handling and DNA extraction.

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出版当年[2013]版:
大类 | 3 区 医学
小类 | 3 区 医学实验技术
最新[2025]版:
大类 | 2 区 医学
小类 | 2 区 医学实验技术
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出版当年[2012]版:
Q1 MEDICAL LABORATORY TECHNOLOGY
最新[2023]版:
Q1 MEDICAL LABORATORY TECHNOLOGY

影响因子: 最新[2023版] 最新五年平均[2021-2025] 出版当年[2012版] 出版当年五年平均[2008-2012] 出版前一年[2011版] 出版后一年[2013版]

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第一作者单位: [2]Peking Univ, Beijing Hosp, Minist Hlth, Sch Clin Med 5,Natl Ctr Clin Labs, Beijing 100871, Peoples R China
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通讯机构: [1]Beijing Hosp, Minist Hlth, Natl Ctr Clin Labs, Beijing 100730, Peoples R China [*1]Beijing Hosp, Minist Hlth, Natl Ctr Clin Labs, 1 Dahua Rd, Beijing 100730, Peoples R China
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