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A Natural Language Processing Pipeline of Chinese Free-Text Radiology Reports for Liver Cancer Diagnosis

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收录情况: ◇ SCIE ◇ SSCI ◇ EI

单位: [1]School of Biomedical Engineering, Capital Medical University, Beijing 100069, China [2]Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing 100069, China [3]Department of Radiology, Beijing Friendship Hospital, Capital Medical University, Beijing, 100050, China [4]Ministry of Education Key Laboratory of Bioinformatics,Bioinformatics Division, Beijing National Research Center for Information Science and Technology,Department of Automation, Tsinghua University, Beijing 100084, China.
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关键词: Feature extraction Radiology Natural language processing Cancer Liver Task analysis Machine learning radiology reports information extraction computer-aided diagnosis BiLSTM-CRF

摘要:
Despite the rapid development of natural language processing (NLP) implementation in electronic medical records (EMRs), Chinese EMRs processing remains challenging due to the limited corpus and specific grammatical characteristics, especially for radiology reports. In this study, we designed an NLP pipeline for the direct extraction of clinically relevant features from Chinese radiology reports, which is the first key step in computer-aided radiologic diagnosis. The pipeline was comprised of named entity recognition, synonyms normalization, and relationship extraction to finally derive the radiological features composed of one or more terms. In named entity recognition, we incorporated lexicon into deep learning model bidirectional long short-term memory-conditional random field (BiLSTM-CRF), and the model finally achieved an F1 score of 93.00%. With the extracted radiological features, least absolute shrinkage and selection operator and machine learning methods (support vector machine, random forest, decision tree, and logistic regression) were used to build the classifiers for liver cancer prediction. For liver cancer diagnosis, random forest had the highest predictive performance in liver cancer diagnosis (F1 score 86.97%, precision 87.71%, and recall 86.25%). This work was a comprehensive NLP study focusing on Chinese radiology reports and the application of NLP in cancer risk prediction. The proposed NLP pipeline for the radiological feature extraction could be easily implemented in other kinds of Chinese clinical texts and other disease predictive tasks.

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出版当年[2019]版:
大类 | 2 区 工程技术
小类 | 2 区 计算机:信息系统 2 区 工程:电子与电气 3 区 电信学
最新[2025]版:
大类 | 4 区 计算机科学
小类 | 4 区 计算机:信息系统 4 区 工程:电子与电气 4 区 电信学
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出版当年[2018]版:
Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS Q1 TELECOMMUNICATIONS Q1 ENGINEERING, ELECTRICAL & ELECTRONIC
最新[2023]版:
Q2 COMPUTER SCIENCE, INFORMATION SYSTEMS Q2 ENGINEERING, ELECTRICAL & ELECTRONIC Q2 TELECOMMUNICATIONS

影响因子: 最新[2023版] 最新五年平均[2021-2025] 出版当年[2018版] 出版当年五年平均[2014-2018] 出版前一年[2017版] 出版后一年[2019版]

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第一作者单位: [1]School of Biomedical Engineering, Capital Medical University, Beijing 100069, China [2]Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing 100069, China
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通讯机构: [1]School of Biomedical Engineering, Capital Medical University, Beijing 100069, China [2]Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing 100069, China
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