单位:[1]School of Biomedical Engineering, Capital Medical University, Beijing 100069, China[2]Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing 100069, China[3]Department of Radiology, Beijing Friendship Hospital, Capital Medical University, Beijing, 100050, China医技科室影像中心放射科首都医科大学附属北京友谊医院[4]Ministry of Education Key Laboratory of Bioinformatics,Bioinformatics Division, Beijing National Research Center for Information Science and Technology,Department of Automation, Tsinghua University, Beijing 100084, China.
Despite the rapid development of natural language processing (NLP) implementation in electronic medical records (EMRs), Chinese EMRs processing remains challenging due to the limited corpus and specific grammatical characteristics, especially for radiology reports. In this study, we designed an NLP pipeline for the direct extraction of clinically relevant features from Chinese radiology reports, which is the first key step in computer-aided radiologic diagnosis. The pipeline was comprised of named entity recognition, synonyms normalization, and relationship extraction to finally derive the radiological features composed of one or more terms. In named entity recognition, we incorporated lexicon into deep learning model bidirectional long short-term memory-conditional random field (BiLSTM-CRF), and the model finally achieved an F1 score of 93.00%. With the extracted radiological features, least absolute shrinkage and selection operator and machine learning methods (support vector machine, random forest, decision tree, and logistic regression) were used to build the classifiers for liver cancer prediction. For liver cancer diagnosis, random forest had the highest predictive performance in liver cancer diagnosis (F1 score 86.97%, precision 87.71%, and recall 86.25%). This work was a comprehensive NLP study focusing on Chinese radiology reports and the application of NLP in cancer risk prediction. The proposed NLP pipeline for the radiological feature extraction could be easily implemented in other kinds of Chinese clinical texts and other disease predictive tasks.
基金:
National Natural Science Foundation of ChinaNational Natural Science Foundation of China (NSFC) [81701792, 81971707]; National Key Research and Development Program of China [2018YFC0910404]
语种:
外文
被引次数:
WOS:
中科院(CAS)分区:
出版当年[2019]版:
大类|2 区工程技术
小类|2 区计算机:信息系统2 区工程:电子与电气3 区电信学
最新[2025]版:
大类|4 区计算机科学
小类|4 区计算机:信息系统4 区工程:电子与电气4 区电信学
JCR分区:
出版当年[2018]版:
Q1COMPUTER SCIENCE, INFORMATION SYSTEMSQ1TELECOMMUNICATIONSQ1ENGINEERING, ELECTRICAL & ELECTRONIC
最新[2023]版:
Q2COMPUTER SCIENCE, INFORMATION SYSTEMSQ2ENGINEERING, ELECTRICAL & ELECTRONICQ2TELECOMMUNICATIONS
第一作者单位:[1]School of Biomedical Engineering, Capital Medical University, Beijing 100069, China[2]Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing 100069, China
通讯作者:
通讯机构:[1]School of Biomedical Engineering, Capital Medical University, Beijing 100069, China[2]Beijing Key Laboratory of Fundamental Research on Biomechanics in Clinical Application, Capital Medical University, Beijing 100069, China
推荐引用方式(GB/T 7714):
Liu Honglei,Xu Yan,Zhang Zhiqiang,et al.A Natural Language Processing Pipeline of Chinese Free-Text Radiology Reports for Liver Cancer Diagnosis[J].IEEE ACCESS.2020,8:159110-159119.doi:10.1109/ACCESS.2020.3020138.
APA:
Liu, Honglei,Xu, Yan,Zhang, Zhiqiang,Wang, Ni,Huang, Yanqun...&Chen, Hui.(2020).A Natural Language Processing Pipeline of Chinese Free-Text Radiology Reports for Liver Cancer Diagnosis.IEEE ACCESS,8,
MLA:
Liu, Honglei,et al."A Natural Language Processing Pipeline of Chinese Free-Text Radiology Reports for Liver Cancer Diagnosis".IEEE ACCESS 8.(2020):159110-159119