BACKGROUND: Calcification is an important criterion for classification between benign and malignant thyroid nodules. Deep learning provides an important means for automatic calcification recognition, but it is tedious to annotate pixel-level labels for calcifications with various morphologies. OBJECTIVE: This study aims to improve accuracy of calcification recognition and prediction of its location, as well as to reduce the number of pixel-level labels in model training. METHODS: We proposed a collaborative supervision network based on attention gating (CS-AGnet), which was composed of two branches: a segmentation network and a classification network. The reorganized two-stage collaborative semi-supervised model was trained under the supervision of all image-level labels and few pixel-level labels. RESULTS: The results show that although our semi-supervised network used only 30% (289 cases) of pixel-level labels for training, the accuracy of calcification recognition reaches 92.1%, which is very close to 92.9% of deep supervision with 100% (966 cases) pixel-level labels. The CS-AGnet enables to focus the model's attention on calcification objects. Thus, it achieves higher accuracy than other deep learning methods. CONCLUSIONS: Our collaborative semi-supervised model has a preferable performance in calcification recognition, and it reduces the number of manual annotations of pixel-level labels. Moreover, it may be of great reference for the object recognition of medical dataset with few labels.