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T cell-related prognostic risk model and tumor immune environment modulation in lung adenocarcinoma based on single-cell and bulk RNA sequencing

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单位: [1]Beijing Univ Chinese Med, Sch Chinese Mat Med, Beijing 100029, Peoples R China [2]Beijing Univ Chinese Med, Sch Management, Beijing 100029, Peoples R China [3]Univ Elect Sci & Technol China, Inst Fundamental & Frontier Sci, Chengdu 610054, Peoples R China [4]China Japan Friendship Hosp, Pharm Dept, Beijing 100029, Peoples R China [5]Minist Educ, Key Lab Mongolian Med Res & Dev Engn, Tongliao 028000, Peoples R China
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关键词: Single-cell RNA sequencing Bulk RNA sequencing Lung adenocarcinoma Tumor immune environment Prognostic risk model T cell

摘要:
Background: T cells are present in all stages of tumor formation and play an important role in the tumor microenvironment. We aimed to explore the expression profile of T cell marker genes, constructed a prognostic risk model based on these genes in Lung adenocarcinoma (LUAD), and investigated the link between this risk model and the immunotherapy response. Methods: We obtained the single-cell sequencing data of LUAD from the literature, and screened out 6 tissue biopsy samples, including 32,108 cells from patients with non-small cell lung cancer, to identify T cell marker genes in LUAD. Combined with TCGA database, a prognostic risk model based on T-cell marker gene was constructed, and the data from GEO database was used for verification. We also investigated the association between this risk model and immunotherapy response. Results: Based on scRNA-seq data 1839 T-cell marker genes were identified, after which a risk model consisting of 9 gene signatures for prognosis was constructed in combination with the TCGA dataset. This risk model divided patients into high-risk and low-risk groups based on overall survival. The multivariate analysis demonstrated that the risk model was an independent prognostic factor. Analysis of immune profiles showed that high-risk groups presented discriminative immune-cell infiltrations and immune-suppressive states. Risk scores of the model were closely correlated with Linoleic acid metabolism, intestinal immune network for IgA production and drug metabolism cytochrome P450. Conclusion: Our study proposed a novel prognostic risk model based on T cell marker genes for LUAD patients. The survival of LUAD patients as well as treatment outcomes may be accurately predicted by the prognostic risk model, and make the high-risk population present different immune cell infiltration and immunosuppression state.

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出版当年[2022]版:
大类 | 2 区 工程技术
小类 | 1 区 数学与计算生物学 2 区 工程:生物医学 2 区 生物学 3 区 计算机:跨学科应用
最新[2025]版:
大类 | 2 区 医学
小类 | 1 区 数学与计算生物学 2 区 生物学 2 区 计算机:跨学科应用 2 区 工程:生物医学
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出版当年[2021]版:
Q1 BIOLOGY Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Q1 ENGINEERING, BIOMEDICAL Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
最新[2023]版:
Q1 BIOLOGY Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS Q1 ENGINEERING, BIOMEDICAL Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY

影响因子: 最新[2023版] 最新五年平均[2021-2025] 出版当年[2021版] 出版当年五年平均[2017-2021] 出版前一年[2020版] 出版后一年[2022版]

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第一作者单位: [1]Beijing Univ Chinese Med, Sch Chinese Mat Med, Beijing 100029, Peoples R China
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