单位:[1]Beijing Univ Chinese Med, Sch Chinese Mat Med, Beijing 100029, Peoples R China[2]Beijing Univ Chinese Med, Sch Management, Beijing 100029, Peoples R China[3]Univ Elect Sci & Technol China, Inst Fundamental & Frontier Sci, Chengdu 610054, Peoples R China[4]China Japan Friendship Hosp, Pharm Dept, Beijing 100029, Peoples R China[5]Minist Educ, Key Lab Mongolian Med Res & Dev Engn, Tongliao 028000, Peoples R China
Background: T cells are present in all stages of tumor formation and play an important role in the tumor microenvironment. We aimed to explore the expression profile of T cell marker genes, constructed a prognostic risk model based on these genes in Lung adenocarcinoma (LUAD), and investigated the link between this risk model and the immunotherapy response. Methods: We obtained the single-cell sequencing data of LUAD from the literature, and screened out 6 tissue biopsy samples, including 32,108 cells from patients with non-small cell lung cancer, to identify T cell marker genes in LUAD. Combined with TCGA database, a prognostic risk model based on T-cell marker gene was constructed, and the data from GEO database was used for verification. We also investigated the association between this risk model and immunotherapy response. Results: Based on scRNA-seq data 1839 T-cell marker genes were identified, after which a risk model consisting of 9 gene signatures for prognosis was constructed in combination with the TCGA dataset. This risk model divided patients into high-risk and low-risk groups based on overall survival. The multivariate analysis demonstrated that the risk model was an independent prognostic factor. Analysis of immune profiles showed that high-risk groups presented discriminative immune-cell infiltrations and immune-suppressive states. Risk scores of the model were closely correlated with Linoleic acid metabolism, intestinal immune network for IgA production and drug metabolism cytochrome P450. Conclusion: Our study proposed a novel prognostic risk model based on T cell marker genes for LUAD patients. The survival of LUAD patients as well as treatment outcomes may be accurately predicted by the prognostic risk model, and make the high-risk population present different immune cell infiltration and immunosuppression state.
基金:
National Natural Science Foundation of China [82074284]; China National Traditional Chinese Medicine Inheritance and Innovation Team Sub-project [ZYYCXTD-C-202005-10]; China Medical Association of Minorities Research Project [2020MZ298-110101]; Open Fund Project, Associated Key Laboratory of Traditional Mongolia Medicine Research and Development, National Ethnic Affairs Commission; Ministry of Education of China [MDK2020013]
第一作者单位:[1]Beijing Univ Chinese Med, Sch Chinese Mat Med, Beijing 100029, Peoples R China
通讯作者:
推荐引用方式(GB/T 7714):
Zhang Jingyuan,Liu Xinkui,Huang Zhihong,et al.T cell-related prognostic risk model and tumor immune environment modulation in lung adenocarcinoma based on single-cell and bulk RNA sequencing[J].COMPUTERS IN BIOLOGY AND MEDICINE.2023,152:doi:10.1016/j.compbiomed.2022.106460.
APA:
Zhang, Jingyuan,Liu, Xinkui,Huang, Zhihong,Wu, Chao,Zhang, Fanqin...&Wu, Jiarui.(2023).T cell-related prognostic risk model and tumor immune environment modulation in lung adenocarcinoma based on single-cell and bulk RNA sequencing.COMPUTERS IN BIOLOGY AND MEDICINE,152,
MLA:
Zhang, Jingyuan,et al."T cell-related prognostic risk model and tumor immune environment modulation in lung adenocarcinoma based on single-cell and bulk RNA sequencing".COMPUTERS IN BIOLOGY AND MEDICINE 152.(2023)