单位:[1]Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China[2]Department of Biotechnology, Beijing Institute of Radiation Medicine, Beijing 100850, China[3]Experimental Center, Beijing Friendship Hospital, Capital Medical University, Beijing 100850, China医技科室北京市临床医学研究所实验中心首都医科大学附属北京友谊医院
The synthetic lethality (SL) relationship arises when a combination of deficiencies in two genes leads to cell death, whereas a deficiency in either one of the two genes does not. The survival of the mutant tumor cells depends on the SL partners of the mutant gene, thereby the cancer cells could be selectively killed by inhibiting the SL partners of the oncogenic genes but normal cells could not. Therefore, there is an urgent need to develop more efficient computational methods of SL pairs identification for cancer targeted therapy. In this paper, we propose a new approach based on similarity fusion to predict SL pairs. Multiple types of gene similarity measures are integrated and k-nearest neighbors algorithm (k-NN) is applied to achieve the similarity-based classification task between gene pairs. As a similarity-based method, our method demonstrated excellent performance in multiple experiments. Besides the effectiveness of our method, the ease of use and expansibility can also make our method more widely used in practice.
第一作者单位:[1]Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China[2]Department of Biotechnology, Beijing Institute of Radiation Medicine, Beijing 100850, China
共同第一作者:
通讯作者:
通讯机构:[1]Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China[2]Department of Biotechnology, Beijing Institute of Radiation Medicine, Beijing 100850, China
推荐引用方式(GB/T 7714):
Lian-Lian Wu,Yu-Qi Wen,Xiao-Xi Yang,et al.Synthetic Lethal Interactions Prediction Based on Multiple Similarity Measures Fusion[J].JOURNAL of COMPUTER SCIENCE and TECHNOLOGY.2021,36(2):261-275.doi:10.1007/s11390-021-0866-2.
APA:
Lian-Lian Wu,Yu-Qi Wen,Xiao-Xi Yang,Bo-Wei Yan,Song He&Xiao-Chen Bo.(2021).Synthetic Lethal Interactions Prediction Based on Multiple Similarity Measures Fusion.JOURNAL of COMPUTER SCIENCE and TECHNOLOGY,36,(2)
MLA:
Lian-Lian Wu,et al."Synthetic Lethal Interactions Prediction Based on Multiple Similarity Measures Fusion".JOURNAL of COMPUTER SCIENCE and TECHNOLOGY 36..2(2021):261-275