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Synthetic Lethal Interactions Prediction Based on Multiple Similarity Measures Fusion

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收录情况: ◇ SCIE ◇ 统计源期刊 ◇ CSCD-C ◇ EI

单位: [1]Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China [2]Department of Biotechnology, Beijing Institute of Radiation Medicine, Beijing 100850, China [3]Experimental Center, Beijing Friendship Hospital, Capital Medical University, Beijing 100850, China
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关键词: synthetic lethality similarity measures fusion k-nearest neighbor multi-dimensional data

摘要:
The synthetic lethality (SL) relationship arises when a combination of deficiencies in two genes leads to cell death, whereas a deficiency in either one of the two genes does not. The survival of the mutant tumor cells depends on the SL partners of the mutant gene, thereby the cancer cells could be selectively killed by inhibiting the SL partners of the oncogenic genes but normal cells could not. Therefore, there is an urgent need to develop more efficient computational methods of SL pairs identification for cancer targeted therapy. In this paper, we propose a new approach based on similarity fusion to predict SL pairs. Multiple types of gene similarity measures are integrated and k-nearest neighbors algorithm (k-NN) is applied to achieve the similarity-based classification task between gene pairs. As a similarity-based method, our method demonstrated excellent performance in multiple experiments. Besides the effectiveness of our method, the ease of use and expansibility can also make our method more widely used in practice.

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出版当年[2020]版:
大类 | 2 区 工程技术
小类 | 2 区 计算机:硬件 3 区 计算机:软件工程
最新[2025]版:
大类 | 4 区 计算机科学
小类 | 4 区 计算机:硬件 4 区 计算机:软件工程
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出版当年[2019]版:
Q3 COMPUTER SCIENCE, HARDWARE & ARCHITECTURE Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING
最新[2023]版:
Q3 COMPUTER SCIENCE, SOFTWARE ENGINEERING Q4 COMPUTER SCIENCE, HARDWARE & ARCHITECTURE

影响因子: 最新[2023版] 最新五年平均[2021-2025] 出版当年[2019版] 出版当年五年平均[2015-2019] 出版前一年[2018版] 出版后一年[2020版]

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第一作者单位: [1]Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China [2]Department of Biotechnology, Beijing Institute of Radiation Medicine, Beijing 100850, China
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通讯机构: [1]Academy of Medical Engineering and Translational Medicine, Tianjin University, Tianjin 300072, China [2]Department of Biotechnology, Beijing Institute of Radiation Medicine, Beijing 100850, China
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